Again one more software guy is in dilemma

I am currently in IT industry and I have work exp of 2 years.
If I do MBA, then my IT work exp will be considered or not, as software engineers are considered as techies and NOT managers?
Is there any course related to IT if I appear for CET? I have heard about SYSTEM course. Does any one about this? Is there any one who has done MBA/MMS in system?
How can I be associated with IT industry after completing MBA/MMS?